This special page shows the last uploaded files.
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Assembly team1.PNG
Dban8
12:29, 28 April 2018
1,151 × 603; 33 KB
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Pyani team1.PNG
Dban8
12:28, 28 April 2018
1,249 × 739; 60 KB
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Home team1.PNG
Dban8
12:11, 28 April 2018
1,197 × 930; 254 KB
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Laravel.png
Dban8
12:02, 28 April 2018
560 × 210; 13 KB
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Strainseeker flowchart.png
Dban8
11:51, 28 April 2018
470 × 161; 5 KB
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Card flowchart.png
Dban8
11:51, 28 April 2018
470 × 221; 8 KB
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Vfdb.png
Dban8
11:51, 28 April 2018
470 × 221; 8 KB
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Assembly flowchart.png
Dban8
11:42, 28 April 2018
416 × 116; 4 KB
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Homepage final.png
Shrey
11:56, 25 April 2018
2,816 × 1,366; 280 KB
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Team2FinalPresentation.pdf
Jlew7
13:27, 24 April 2018
; 3.69 MB
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Pyani updated.png
Csmith366
10:33, 24 April 2018
887 × 189; 18 KB
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Pyani.png
Csmith366
10:06, 24 April 2018
683 × 197; 8 KB
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Comp phen.png
Csmith366
09:59, 24 April 2018
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RGI.png
Shrey
21:53, 23 April 2018
654 × 630; 144 KB
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CARD v.png
Yinquan
19:47, 23 April 2018
1,312 × 1,292; 415 KB
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Downloads Page.png
Yinquan
19:51, 20 April 2018
1,640 × 932; 487 KB
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Assembly Page.png
Yinquan
19:50, 20 April 2018
1,646 × 896; 209 KB
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Homepage.png
Yinquan
19:43, 20 April 2018
1,678 × 924; 431 KB
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StrainSeeker.png
Yinquan
19:11, 20 April 2018
1,378 × 904; 753 KB
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Correction.jpg
Ouyihao
21:36, 19 April 2018
288 × 133; 13 KB
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Bacterialgwas.png
Ouyihao
21:35, 19 April 2018
1,871 × 199; 35 KB
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Manhattanp.png
Ouyihao
21:34, 19 April 2018
1,029 × 650; 282 KB
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Snp samtools.png
Shladyshau3
17:29, 19 April 2018
1,361 × 439; 68 KB
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TSNE vs brunch.png
Shladyshau3
17:22, 19 April 2018
1,184 × 529; 189 KB
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KSNP2.png
Vchivukula
17:21, 19 April 2018
1,976 × 425; 184 KB
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KSNP1.png
Vchivukula
17:21, 19 April 2018
986 × 235; 31 KB
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Tree brunch.png
Shladyshau3
17:06, 19 April 2018
732 × 715; 245 KB
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PCA species.png
Shladyshau3
17:01, 19 April 2018
3,000 × 3,000; 205 KB
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Tree zoomed.png
Shladyshau3
16:53, 19 April 2018
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Pipeline2.png
Vchivukula
16:51, 19 April 2018
940 × 479; 25 KB
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Samples tsne phenotype.png
Shladyshau3
16:24, 19 April 2018
3,000 × 3,000; 210 KB
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PCA phenotype.png
Shladyshau3
16:23, 19 April 2018
3,000 × 3,000; 149 KB
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Multialign.png
Vchivukula
16:17, 19 April 2018
1,770 × 796; 231 KB
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LPS3.png
Vchivukula
15:22, 19 April 2018
343 × 321; 34 KB
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LPS2.png
Vchivukula
15:21, 19 April 2018
612 × 489; 69 KB
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LPS.png
Vchivukula
15:18, 19 April 2018
560 × 489; 58 KB
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Final Results (1).pdf
Ouyihao
13:42, 19 April 2018
; 4.16 MB
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Final Results.pdf
Ouyihao
13:24, 19 April 2018
; 4.1 MB
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Hetero.png
Prachiti
13:04, 19 April 2018
866 × 538; 11 KB
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Sus font.png
Prachiti
13:04, 19 April 2018
866 × 538; 11 KB
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Resistant font.png
Prachiti
13:04, 19 April 2018
866 × 538; 12 KB
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NA font.png
Prachiti
13:03, 19 April 2018
866 × 538; 12 KB
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Piggy.png
Prachiti
13:03, 19 April 2018
866 × 538; 7 KB
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Piggyfinal2.png
Prachiti
13:02, 19 April 2018
866 × 538; 6 KB
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Relative percentages.png
VishnuRaghuram
13:01, 19 April 2018
1,865 × 938; 487 KB
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Piggy2.png
Epark90
13:00, 19 April 2018
866 × 538; 5 KB
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Piggy1.png
Epark90
13:00, 19 April 2018
866 × 538; 11 KB
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Piggy figure.png
Epark90
12:59, 19 April 2018
1,397 × 520; 173 KB
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Manhattan plot.png
VishnuRaghuram
12:54, 19 April 2018
1,622 × 919; 496 KB
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KSNPresults.png
Jlew7
12:44, 19 April 2018
2,846 × 1,196; 512 KB
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Barchart3 mlst.png
Ragyhaddad
17:32, 18 April 2018
1,392 × 830; 117 KB
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Barchart2 mlst.png
Ragyhaddad
17:32, 18 April 2018
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Barchart1 mlst.png
Ragyhaddad
17:28, 18 April 2018
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Mlst table.png
Ragyhaddad
17:17, 18 April 2018
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Webserver team1 p2.pdf
Gbrandt
13:21, 17 April 2018
; 791 KB
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KSNP3Tree.png
Wharvey31
03:40, 16 April 2018
1,162 × 746; 61 KB
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Mash distances cluster.png
VishnuRaghuram
19:20, 15 April 2018
671 × 535; 108 KB
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Mash distances.png
VishnuRaghuram
19:19, 15 April 2018
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Fosfo res.png
Prachiti
16:24, 15 April 2018
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Metadata.png
Prachiti
16:11, 15 April 2018
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Transmembrane.png
Lillywang1126
21:13, 11 April 2018
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Lipoprotein.png
Lillywang1126
21:07, 11 April 2018
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SignalP.jpg
Pooja.khurana
14:11, 11 April 2018
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Signal P.jpg
Pooja.khurana
13:56, 11 April 2018
470 × 345; 29 KB
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Rgi.png
SeaPandaOG
12:45, 11 April 2018
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CRISPR.png
Jiani
10:15, 11 April 2018
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Box plot egg.png
Brianm
23:34, 10 April 2018
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Virulencefactors.png
Prachiti
23:09, 10 April 2018
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Uclustmethod.png
Prachiti
23:09, 10 April 2018
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Uclust ucfile.png
Prachiti
23:09, 10 April 2018
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Operons.png
Prachiti
23:09, 10 April 2018
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Nucleotide clustering.png
Prachiti
23:08, 10 April 2018
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Pipline.png
Rjplace
17:38, 10 April 2018
1,520 × 1,240; 29 KB
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Annotation Pipeline.png
Kagarwal
12:34, 10 April 2018
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Overall stats.PNG
Kagarwal
12:22, 10 April 2018
379 × 501; 15 KB
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DeepArg.png
Kagarwal
12:14, 10 April 2018
1,455 × 742; 61 KB
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Door2.png
Kagarwal
12:07, 10 April 2018
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VFDB.png
Kagarwal
12:07, 10 April 2018
1,468 × 742; 56 KB
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CARD.png
Kagarwal
12:06, 10 April 2018
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TMHMM.png
Kagarwal
12:06, 10 April 2018
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LipoP.png
Kagarwal
12:06, 10 April 2018
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Phobius.png
Kagarwal
12:05, 10 April 2018
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SignalP.png
Kagarwal
11:46, 10 April 2018
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GeneMark annotations.png
Kagarwal
11:39, 10 April 2018
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Prodigal annotations.png
Kagarwal
11:35, 10 April 2018
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EggNOG annotations.png
Kagarwal
11:25, 10 April 2018
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Phaster.png
Siulung2005
22:26, 9 April 2018
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Eggnog.png
Kagarwal
18:02, 9 April 2018
520 × 1,219; 203 KB
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Eggnog pipeline.png
Brianm
14:39, 8 April 2018
308 × 753; 83 KB
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Gkv1248fig1.jpg
Brianm
14:11, 8 April 2018
799 × 2,204; 389 KB
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Lecture23-Chande-2018.pdf
Arch
12:29, 5 April 2018
; 588 KB
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TableSensitivity.png
Vcaban
21:55, 27 March 2018
550 × 156; 40 KB
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Venn.png
Parisa
21:16, 27 March 2018
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Venn-diagram.png
Parisa
21:12, 27 March 2018
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Tools Comparison.png
Parisa
20:57, 27 March 2018
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Prodigal hist.png
Parisa
20:57, 27 March 2018
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Intersecting LinePlot.png
Parisa
20:56, 27 March 2018
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GeneMarkS hist.png
Parisa
20:56, 27 March 2018
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Blast Hits.png
Parisa
20:56, 27 March 2018
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AbInit ncRna Blast.png
Parisa
20:55, 27 March 2018
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Table unionGP1.png
Vcaban
13:15, 27 March 2018
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FinalPipe GP1.png
Vcaban
13:06, 27 March 2018
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Table Union.png
Vcaban
12:59, 27 March 2018
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VenDiagram.png
Vcaban
12:39, 27 March 2018
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Genemark HMM.png
Vcaban
12:30, 27 March 2018
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Prodigal results.png
Vcaban
12:30, 27 March 2018
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Infernal reusults.png
Vcaban
12:26, 27 March 2018
970 × 528; 62 KB
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RNAmmer results.png
Vcaban
12:25, 27 March 2018
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Aragorn results.png
Vcaban
12:24, 27 March 2018
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FinalGenePrediction.png
Vcaban
12:17, 27 March 2018
1,539 × 724; 127 KB
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Final pipelineGenePrediction1.png
Vcaban
12:14, 27 March 2018
1,198 × 546; 164 KB
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TmRNAs.png
Jiani
23:43, 26 March 2018
1,443 × 854; 92 KB
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TRNAs.png
Jiani
23:43, 26 March 2018
1,112 × 668; 73 KB
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Hmm.png
Zhangqi
21:11, 26 March 2018
750 × 600; 105 KB
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Final-pipeline.png
Parisa
20:53, 26 March 2018
887 × 459; 66 KB
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Merge-union.png
Parisa
19:41, 26 March 2018
702 × 574; 76 KB
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Prodigal.jpg
Zhangqi
19:38, 26 March 2018
1,200 × 799; 55 KB
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HMM.png
Zhangqi
17:09, 26 March 2018
1,110 × 702; 422 KB
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Blast.gif
Parisa
14:00, 26 March 2018
554 × 332; 14 KB
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Global.png
Parisa
13:30, 26 March 2018
765 × 101; 72 KB
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Local.png
Parisa
13:30, 26 March 2018
717 × 95; 56 KB
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Comare-genomes.png
Parisa
13:14, 26 March 2018
1,123 × 219; 48 KB
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Team1 GP ProkaryoticGene.jpg
Csmith366
10:13, 23 March 2018
709 × 295; 45 KB
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Team1 GP Outline.JPG
Csmith366
10:00, 23 March 2018
989 × 526; 60 KB
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Isolate-metadata.xlsx
Arch
07:45, 15 March 2018
; 19 KB
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Gene Prediction 1 HW.pdf
Moth
10:43, 12 March 2018
; 29 KB
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B a.png
Parisa
23:41, 10 March 2018
1,405 × 693; 133 KB
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Denovopipeline.png
VishnuRaghuram
17:49, 9 March 2018
767 × 92; 8 KB
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Screenshot (99).png
VishnuRaghuram
15:59, 9 March 2018
1,228 × 1,202; 91 KB
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Screenshot (100).png
VishnuRaghuram
15:59, 9 March 2018
1,191 × 1,218; 87 KB
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Screenshot (101).png
VishnuRaghuram
15:57, 9 March 2018
1,203 × 1,192; 59 KB
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Final pipeline.png
Vchivukula
19:26, 6 March 2018
1,883 × 181; 128 KB
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Assembly of unmapped reads.png
Epark90
14:27, 6 March 2018
1,375 × 272; 233 KB
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SPAdes dendrogram.png
Vchivukula
13:43, 6 March 2018
1,074 × 195; 145 KB
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Skesa over skesa heatmap.png
Vchivukula
13:35, 6 March 2018
3,000 × 3,000; 182 KB
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Skesa heatmap.png
Vchivukula
13:32, 6 March 2018
794 × 796; 263 KB
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Skesa dendrogram.png
Vchivukula
13:24, 6 March 2018
1,058 × 242; 69 KB
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FINAL PIPELINE1.jpg
VishnuRaghuram
13:05, 6 March 2018
752 × 563; 40 KB
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FINAL PIPELINE.jpg
VishnuRaghuram
13:00, 6 March 2018
752 × 563; 40 KB
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De novo Assembly Using Skesa.PNG
QinweiZ
12:37, 6 March 2018
1,521 × 787; 152 KB
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Scaffolding Using SSPACE.PNG
QinweiZ
12:36, 6 March 2018
1,513 × 711; 157 KB
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Choosing reference genome.png
Shladyshau3
12:35, 6 March 2018
1,085 × 576; 120 KB
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Evaluation assemblies.PNG
QinweiZ
12:32, 6 March 2018
1,481 × 773; 174 KB
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Mash Distance of Assemblies.PNG
QinweiZ
12:25, 6 March 2018
1,537 × 817; 102 KB
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Quality of assemblies.PNG
QinweiZ
12:20, 6 March 2018
1,325 × 833; 127 KB
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SPAdes N50.PNG
QinweiZ
12:09, 6 March 2018
1,268 × 681; 71 KB
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SPAdes number of contigs.PNG
QinweiZ
12:09, 6 March 2018
1,258 × 663; 83 KB
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SPAdes largest contig.PNG
QinweiZ
12:08, 6 March 2018
1,275 × 661; 78 KB
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Choice of Reference Genomes.png
QinweiZ
12:02, 6 March 2018
1,308 × 693; 120 KB
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Updated pipeline.png
VishnuRaghuram
11:56, 6 March 2018
751 × 581; 34 KB
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Quast sspace.png
VishnuRaghuram
10:27, 6 March 2018
2,167 × 1,218; 102 KB
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Quast table sspace.png
VishnuRaghuram
10:26, 6 March 2018
1,555 × 1,170; 183 KB
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Quast table.png
Parisa
00:10, 6 March 2018
711 × 667; 174 KB
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Quast.png
Parisa
00:09, 6 March 2018
1,075 × 695; 92 KB
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L50.png
Parisa
21:53, 5 March 2018
355 × 212; 32 KB
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N50.png
Parisa
21:53, 5 March 2018
378 × 131; 20 KB
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Scafolding.png
Parisa
21:19, 5 March 2018
767 × 390; 169 KB
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Debruijn simple.png
Parisa
20:59, 5 March 2018
1,328 × 545; 133 KB
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Unicycler multiplicty.png
Parisa
20:59, 5 March 2018
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Unicycler repeat.png
Parisa
20:59, 5 March 2018
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6fastqc.png
Parisa
19:42, 5 March 2018
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6.png
Parisa
19:34, 5 March 2018
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4FASTQC.png
Parisa
19:33, 5 March 2018
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Dtring.png
Scho92
19:15, 5 March 2018
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Trimm.png
Scho92
19:12, 5 March 2018
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New workflow.png
QinweiZ
16:51, 5 March 2018
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Pip.png
QinweiZ
16:49, 5 March 2018
1,384 × 574; 106 KB
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MultiQC.png
Parisa
16:40, 5 March 2018
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Ref assembly.png
Parisa
10:18, 5 March 2018
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5MULTIQC.png
Parisa
03:13, 5 March 2018
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5.png
Parisa
02:28, 5 March 2018
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4.png
Parisa
01:35, 5 March 2018
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3.jpg
Parisa
23:28, 4 March 2018
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1.png
Parisa
13:47, 4 March 2018
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2.jpg
Parisa
13:30, 4 March 2018
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1.jpg
Parisa
13:30, 4 March 2018
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Bwt8.png
QinweiZ
22:37, 28 February 2018
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Bwt7.png
QinweiZ
22:37, 28 February 2018
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Bwt6.png
QinweiZ
22:32, 28 February 2018
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Bwt5.png
QinweiZ
22:32, 28 February 2018
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Bwt4.png
QinweiZ
22:22, 28 February 2018
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Bwt3.png
QinweiZ
22:22, 28 February 2018
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Bwt2.png
QinweiZ
22:21, 28 February 2018
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Bwt1.png
QinweiZ
22:21, 28 February 2018
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Pipeline.png
Scho92
00:26, 28 February 2018
2,175 × 1,146; 454 KB
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Lecture15-Chande-2018.pdf
Arch
15:38, 27 February 2018
; 3.25 MB
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General workflow.png
QinweiZ
10:43, 27 February 2018
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Heteroresistant subpopulation.png
QinweiZ
10:32, 27 February 2018
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Bacterial Genomics.png
QinweiZ
10:10, 27 February 2018
548 × 495; 283 KB
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Klebsiella.png
QinweiZ
09:51, 27 February 2018
347 × 347; 344 KB
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Team1group2background.pdf
Csmith366
15:26, 23 February 2018
; 1.26 MB
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Team 2 GenePrediction.pdf
Sarthak
14:10, 22 February 2018
; 850 KB
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Lecture12-Borodovsky-2018.pdf
Arch
11:00, 22 February 2018
; 4.84 MB
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Lecture13-Marino-2018.pdf
Arch
10:58, 22 February 2018
; 5.29 MB