Team II Functional Annotation Group

Introduction

Functional Annotation

Data

We are given 258 assembled genomes and predicted genes of Klebsiella spp.

Approach

Ab-initio Prediction

Final Pipeline

Pipeline Options

-f The fast version of the pipeline will be run GeneMark-S will not be run → GeneMark HMM will be run instead GeneMark-S: Creates a model for every genome → More accurate! GeneMark-HMM: Creates one model and uses it for all genomes Rfam will not be run (could affect sRNA predictions)

-t The temporary files will be kept Results from all tools Results from all merging steps

-v Verbose mode

Team II Functional Annotation Group

Contents

Introduction

Functional Annotation

Data

Approach

Ab-initio Prediction

Final Pipeline

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Team II Functional Annotation Group

Introduction

Functional Annotation

Data

Approach

Ab-initio Prediction

Final Pipeline

Navigation menu

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