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* [[media:Lecture1-Jordan-2018.pdf |Jordan Lecture 1 - Intro to Compgenomics]] | * [[media:Lecture1-Jordan-2018.pdf |Jordan Lecture 1 - Intro to Compgenomics]] | ||
* [[media:Lecture2- | * [[media:Lecture2-Chande-2018.pdf |Chande Lecture 2 - Wiki and Github]] | ||
* [[media:Lecture3-Chande-2018.pdf |Chande Lecture | * [[media:Lecture3-Chande-2018.pdf |Chande Lecture 3 - Source Code Management]] | ||
* [[media:Lecture4-Jordan- | * [[media:Lecture4-Jordan-2018.pdf |Jordan Lecture 4 - High Performance and Cloud Computing for Bioinformatics]] | ||
* [[media:Lecture5-Weiss-2018.pdf |Weiss Lecture 5 - Project introduction]] | * [[media:Lecture5-Weiss-2018.pdf |Weiss Lecture 5 - Project introduction]] | ||
* [[media:Lecture6-Jordan-2018.pdf |Jordan Lecture 6 - Genomic Approaches to Molecular Epidemiology Typing]] | * [[media:Lecture6-Jordan-2018.pdf |Jordan Lecture 6 - Genomic Approaches to Molecular Epidemiology Typing]] | ||
* [[media:Lecture7-Katz-2018.pdf |Katz Lecture 7 - Computational Assembly for Prokaryotic Sequencing Projects ]] | * [[media:Lecture7-Katz-2018.pdf |Katz Lecture 7 - Computational Assembly for Prokaryotic Sequencing Projects ]] | ||
* [[media:Lecture8-Sammons-2018.pdf |Sammons Lecture 9 - CDC's Advanced Molecular Detection and Publich Health ]] | * [[media:Lecture8-Sammons-2018.pdf |Sammons Lecture 9 - CDC's Advanced Molecular Detection and Publich Health ]] | ||
* [[media:Lecture10- | * [[media:Lecture10-Medina-2018.pdf | Luz Lecture 10 - Computational Phenotyping and Alignment-free methods]] | ||
* [[media:Lecture10-Espitia-2018.pdf | Hector Lecture 10 - Computational Phenotyping and Alignment-free methods]] | |||
* [[media:Lecture12-Borodovsky-2018.pdf | Borodovsky Lecture 12]] | * [[media:Lecture12-Borodovsky-2018.pdf | Borodovsky Lecture 12]] | ||
* [[media:Lecture13-Marino-2018.pdf | Marino Lecture 13]] | * [[media:Lecture13-Marino-2018.pdf | Marino Lecture 13]] | ||
* [[media: | * [[media:Lecture15-Chande-2018.pdf | Chande Lecture 14 - Functional Annotation and Comparative Genomics]] | ||
* [[media:Lecture23-Chande-2018.pdf | Chande Lecture 23 - Predictive webservers and online bioinformatics resources]] | * [[media:Lecture23-Chande-2018.pdf | Chande Lecture 23 - Predictive webservers and online bioinformatics resources]] | ||
== | == Team 1 Presentations == | ||
=== Genome Assembly Presentations === | === Genome Assembly Presentations === | ||
[[media:GenomeAssembly_Team1_Klebsiella_version2.pdf | Background and Strategy]] | |||
[[media:T1G1_Preliminary_Results_Presentation.pdf | Lab & Preliminary Results]] | |||
[[media:Final_Results_Assembly.pdf | Final Results Genome Assembly]] | |||
=== Gene Prediction Presentations === | === Gene Prediction Presentations === | ||
[[media:team1group2background.pdf | Background & Strategy]] | |||
[[media:team1group2preliminaryresults.pdf | Preliminary Results]] | |||
[[media:Team1_gene_prediction_final_results.pdf | Final Results]] | |||
=== Function Annotation Presentations === | === Function Annotation Presentations === | ||
[[media:Functional_Annotation_Presentation_1.pdf | Background & Strategy]] | |||
[[media:Functional_Annotation_Presentation_2.pdf | Preliminary Results]] | |||
[[media:Functional_Annotation_Presentation_3.pdf | Final Results]] | |||
=== Comparative Genomics Presentations === | === Comparative Genomics Presentations === | ||
=== | [[media:Comparative_Genomics_Team1_Background.pptx.pdf | Background and Strategy]] | ||
[[media:Comparative_Genomics_Lab_&_Preliminary_Result.pdf | Preliminary Results]] | |||
[[media:Final Results (1).pdf | Final Results]] | |||
=== Predictive Webserver Presentations === | |||
[[media:Webserver_team1_p1.pdf | Background & Strategy]] | |||
[[media:Webserver_team1_p2_(1).pdf | Midterm Report]] | |||
[[media:Team_1_final_presentation.pdf | Final Presentation]] | |||
== | == Team 2 Presentations == | ||
=== Genome Assembly Presentations === | === Genome Assembly Presentations === | ||
[[media:Team_2_Genome_Assembly_2.pdf | Background and Strategy]] | |||
[[media:Team_2_Genome_Assembly_Pre.pdf | Preliminary Results]] | |||
[[media:Team_2_Results_Protocol_Demo.pdf | Final Results]] | |||
=== Gene Prediction Presentations === | === Gene Prediction Presentations === | ||
[[media:Team2_GenePrediction_Background_Strategy.pdf | Background and Strategy]] | |||
[[media:Team2_genePrediction_prelim_results.pdf | Preliminary Results]] | |||
[[media:Team2_GenePrediction_Presentation3.pdf | Final Results]] | |||
=== Functional Annotation Presentations === | === Functional Annotation Presentations === | ||
[[media:Functional_Annotation_Team_2_PPT-1.pdf | Background and Strategy]] | |||
[[media:Functional_Annotation_Team2_Prelim_.pdf | Preliminary Results ]] | |||
[[media:Functional_Annotation_Final_Results.pdf | Final Results ]] | |||
=== Comparative Genomics Presentations === | === Comparative Genomics Presentations === | ||
=== | [[media:compgenomics_background.pdf | Background and Strategy]] | ||
[[media:Comp-Genomics_Prelim_Results.pdf | Preliminary Results]] | |||
[[media:Comp-Genomics_Final_Results.pdf | Final Results]] | |||
=== Predictive Web Server Presentations === | |||
[[media:Background and Strategy.pdf | Background and Strategy]] | |||
[[media:PredictiveWebserverPrelim.pdf | Preliminary Results]] | |||
== Final Presentation == | == Final Presentation == | ||
[[media:Team2FinalPresentation.pdf | Final Presentation]] | |||
Latest revision as of 12:31, 24 April 2018
Lecture Slides
- Jordan Lecture 1 - Intro to Compgenomics
- Chande Lecture 2 - Wiki and Github
- Chande Lecture 3 - Source Code Management
- Jordan Lecture 4 - High Performance and Cloud Computing for Bioinformatics
- Weiss Lecture 5 - Project introduction
- Jordan Lecture 6 - Genomic Approaches to Molecular Epidemiology Typing
- Katz Lecture 7 - Computational Assembly for Prokaryotic Sequencing Projects
- Sammons Lecture 9 - CDC's Advanced Molecular Detection and Publich Health
- Luz Lecture 10 - Computational Phenotyping and Alignment-free methods
- Hector Lecture 10 - Computational Phenotyping and Alignment-free methods
- Borodovsky Lecture 12
- Marino Lecture 13
- Chande Lecture 14 - Functional Annotation and Comparative Genomics
- Chande Lecture 23 - Predictive webservers and online bioinformatics resources