Team II Functional Annotation Group: Difference between revisions
Jump to navigation
Jump to search
Siulung2005 (talk | contribs) |
|||
| Line 27: | Line 27: | ||
===CRISPR=== | ===CRISPR=== | ||
Version: Piler-CR 1.06 <br> | |||
PILER-CR is a program which specifically designed for the identification and analysis of CRISPR repeats. The program executes rapidly and has both high sensitivity and high specificity. | |||
<div style="border: 1pt dashed black; background : grey; padding: 1em 1em;"> | |||
Input: FASTA<br> | |||
Output: Piler-CR specific report format </div> | |||
Performance by using reference genome:<br> | |||
<div style="border: 1pt dashed black; background : grey; padding: 1em 1em;"> | |||
Run-time: ~5 seconds for a 5Mb genome<br> | |||
CRISPR found:2 | |||
</div> | |||
==Others== | ==Others== | ||
Revision as of 21:25, 6 April 2018
Introduction
Functional Annotation
Data
We are given 258 assembled genomes and predicted genes of Klebsiella spp.
Approach
Protein-Coding Regions
Signaling Peptides
Transmembrane Regions
Lipoproteins
Operons
Pathways
Non-coding RNA
rRNA, tRNA, and sRNA
Please refer to "Team II Gene Prediction Group - RNA Prediction" [1]
CRISPR
Version: Piler-CR 1.06
PILER-CR is a program which specifically designed for the identification and analysis of CRISPR repeats. The program executes rapidly and has both high sensitivity and high specificity.
Input: FASTA
Performance by using reference genome:
Run-time: ~5 seconds for a 5Mb genome
CRISPR found:2