Team II Functional Annotation Group: Difference between revisions

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Created page with "==Introduction== ===Functional Annotation=== ===Data=== We are given 258 assembled genomes and predicted genes of ''Klebsiella spp''. ===Approach=== ==Ab-initio Pred..."
 
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==Final Pipeline==
==Final Pipeline==
[[File: Final-pipeline.png]]
'''Pipeline Options'''
'''-f''' The fast version of the pipeline will be run
GeneMark-S will not be run → GeneMark HMM will be run instead
GeneMark-S: Creates a model for every genome → More accurate!
GeneMark-HMM: Creates one model and uses it for all genomes
Rfam will not be run (could affect sRNA predictions)
'''-t''' The temporary files will be kept
Results from all tools
Results from all merging steps
'''-v''' Verbose mode

Revision as of 20:54, 6 April 2018

Introduction

Functional Annotation

Data

We are given 258 assembled genomes and predicted genes of Klebsiella spp.

Approach

Ab-initio Prediction

Final Pipeline