Team II Functional Annotation Group: Difference between revisions

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==Non-coding RNA==
==Non-coding RNA==
===rRNA, tRNA, and sRNA===
===rRNA, tRNA, and sRNA===
Please refer to "Team II Gene Prediction Group - RNA Prediction"
[http://www.compgenomics2018.biosci.gatech.edu/Team_II_Gene_Prediction_Group#RNA_Prediction]
===CRISPR===
===CRISPR===



Revision as of 21:06, 6 April 2018

Introduction

Functional Annotation

Data

We are given 258 assembled genomes and predicted genes of Klebsiella spp.

Approach

Protein-coding regions

Signaling peptides

Transmembrane regions

Lipoproteins

Operons

Pathways

Non-coding RNA

rRNA, tRNA, and sRNA

Please refer to "Team II Gene Prediction Group - RNA Prediction" [1]

CRISPR

Others

Antibiotic resistance

Virulence factors

Prophage genes

Final Pipeline