Team I Functional Annotation Group: Difference between revisions
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=='''Tools'''== | =='''Tools'''== | ||
'''Prokka''' | |||
Command: | |||
<pre>prokka --outdir <output_directory> --kingdom <species' kingdom> --genus <species' genus> --gram <> --prefix <output_file> <input_file> <pre> | |||
'''Eggnog''' | '''Eggnog''' | ||
Revision as of 14:33, 9 April 2018
Introduction
Background
Functional annotation is the process of locating genes and identifying their functions (biochemical functions, regulatory functions, etc.) in the genome.
Objective
- Fully annotate 258 genomes from Gene Prediction group, focusing on antibiotic resistance
- Provide Comparative Genomics group with data required to perform Genome Wide Association Study(GWAS)
Pipeline
Tools
Prokka Command:
prokka --outdir <output_directory> --kingdom <species' kingdom> --genus <species' genus> --gram <> --prefix <output_file> <input_file>Eggnog LipoP SignalPResult
Reference