Team I Functional Annotation Group: Difference between revisions
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=='''Tools'''== | =='''Tools'''== | ||
'''Prokka''' | '''Prokka''' | ||
Command: | Command: | ||
<pre>prokka --outdir <output_directory> --kingdom <species' kingdom> --genus <species' genus> --gram <> --prefix <output_file> <input_file> | <pre>prokka --outdir <output_directory> --kingdom <species' kingdom> --genus <species' genus> --gram <> --prefix <output_file> <input_file> </pre> | ||
'''Eggnog''' | '''Eggnog''' | ||
Revision as of 14:33, 9 April 2018
Introduction
Background
Functional annotation is the process of locating genes and identifying their functions (biochemical functions, regulatory functions, etc.) in the genome.
Objective
- Fully annotate 258 genomes from Gene Prediction group, focusing on antibiotic resistance
- Provide Comparative Genomics group with data required to perform Genome Wide Association Study(GWAS)
Pipeline
Tools
Prokka
Command:
prokka --outdir <output_directory> --kingdom <species' kingdom> --genus <species' genus> --gram <> --prefix <output_file> <input_file>
Eggnog
LipoP
SignalP