Team I Genome Assembly Group: Difference between revisions
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'''Figure 1'''. ''Klebsiella'' (http://healthcare.bioquell.com) | '''Figure 1'''. ''Klebsiella'' (http://healthcare.bioquell.com) | ||
''Features of Klebsiella[ | ''Features of Klebsiella[2,3]: '' | ||
a) Gram negative, non-motile, straight rods, Capsule forming; | a) Gram negative, non-motile, straight rods, Capsule forming; | ||
b) Singly, in pairs or short chains; | b) Singly, in pairs or short chains; | ||
Revision as of 09:10, 27 February 2018
The group is conducting its discussions, planning, etc. on the Open Academic Environment. Our group is public.
Introduction
Background
Figure 1. Klebsiella (http://healthcare.bioquell.com)
Features of Klebsiella[2,3]: a) Gram negative, non-motile, straight rods, Capsule forming; b) Singly, in pairs or short chains; c) Both respiratory and fermentative metabolism, facultative (metablolism switching based on environment) d) Oxidase negative
Data
Objective
Methods
Pipeline
Pre-processing
Assembly
Algorithms
Burrows–Wheeler Transform(BWT)
De Bruijn graph
Discussion
Conclusions
References
1. Perna, Nicole T., Guy Plunkett III, Valerie Burland, Bob Mau, Jeremy D. Glasner, Debra J. Rose, George F. Mayhew et al. "Genome sequence of enterohaemorrhagic Escherichia coli O157: H7." Nature 409, no. 6819 (2001): 529.
2. Bergey, David Hendricks, Robert Stanley Breed, Everitt George Dunne Murray, and A. Parker Hitchens. Bergey's manual of determinative bacteriology. Baltimore: Williams & Wilkins, 1934.
3. Wikipedia contributors, "Klebsiella," Wikipedia, The Free Encyclopedia, https://en.wikipedia.org/w/index.php?title=Klebsiella&oldid=821116734 (accessed February 27, 2018).