Team II Functional Annotation Group
Introduction
Functional Annotation
Data
We are given 258 assembled genomes and predicted genes of Klebsiella spp.
Approach
Ab-initio Prediction
Final Pipeline
Pipeline Options
-f The fast version of the pipeline will be run GeneMark-S will not be run → GeneMark HMM will be run instead GeneMark-S: Creates a model for every genome → More accurate! GeneMark-HMM: Creates one model and uses it for all genomes Rfam will not be run (could affect sRNA predictions)
-t The temporary files will be kept
Results from all tools
Results from all merging steps
-v Verbose mode