Team II Functional Annotation Group

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Introduction

Functional Annotation

Data

We are given 258 assembled genomes and predicted genes of Klebsiella spp.

Approach

Ab-initio Prediction

Final Pipeline

Pipeline Options

-f The fast version of the pipeline will be run GeneMark-S will not be run → GeneMark HMM will be run instead GeneMark-S: Creates a model for every genome → More accurate! GeneMark-HMM: Creates one model and uses it for all genomes Rfam will not be run (could affect sRNA predictions)


-t The temporary files will be kept Results from all tools Results from all merging steps


-v Verbose mode