Team I Functional Annotation Group

Introduction

Background

Functional annotation is the process of locating genes and identifying their functions (biochemical functions, regulatory functions, etc.) in the genome.

Objective

• Fully annotate 258 genomes from Gene Prediction group, focusing on antibiotic resistance
• Provide Comparative Genomics group with data required to perform Genome Wide Association Study(GWAS)

Tools

Prokka Command:

prokka --outdir <output_directory> --kingdom <species' kingdom> --genus <species' genus> --gram <> --prefix <output_file> <input_file>  

Eggnog

LipoP

SignalP

Result
Reference