Team I Genome Assembly Group

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The group is conducting its discussions, planning, etc. on the Open Academic Environment. Our group is public.

Introduction

Background

Figure 1. Klebsiella (http://healthcare.bioquell.com)

Features of Klebsiella: a) Gram negative, non-motile, straight rods, Capsule forming; b) Singly, in pairs or short chains; c) Both respiratory and fermentative metabolism, facultative (metablolism switching based on environment) d) Oxidase negative

Data

Objective

Methods

Pipeline

Pre-processing

Assembly

Algorithms

Burrows–Wheeler Transform(BWT)

De Bruijn graph

Discussion

Conclusions

References

1. Bergey, David Hendricks, Robert Stanley Breed, Everitt George Dunne Murray, and A. Parker Hitchens. Bergey's manual of determinative bacteriology. Baltimore: Williams & Wilkins, 1934.

2. Wikipedia contributors, "Klebsiella," Wikipedia, The Free Encyclopedia, https://en.wikipedia.org/w/index.php?title=Klebsiella&oldid=821116734 (accessed February 27, 2018).